diff --git a/configure.ac b/configure.ac
index 4e1c30521b5f92c3aee56006c1626605d1dfe430..2b3465b730d4d61f47726bcc9fbb57f23379411b 100644
--- a/configure.ac
+++ b/configure.ac
@@ -23,6 +23,10 @@ AC_SUBST([LDADD], '$(top_builddir)/lib/libdunecommon.la')
 AC_CONFIG_FILES([Makefile
      lib/Makefile
      bin/Makefile
+     cmake/Makefile
+     cmake/modules/Makefile
+     cmake/scripts/Makefile
+     cmake/pkg/Makefile
      dune/Makefile
      dune/common/Makefile
      dune/common/test/Makefile