[cmake] use parameter.in for cmake build instead of parameter file

dune/fem-dg/test/advdiff/CMakeLists.txt

@@ -12,7 +12,7 @@ set(GRIDDIM  2)
 set(DIMRANGE  1)
 set(FLUX 1) #2
 
-configure_file(parameter ${CMAKE_CURRENT_BINARY_DIR}/parameter COPYONLY)
+configure_file(parameter.in ${CMAKE_CURRENT_BINARY_DIR}/parameter)
 
 add_definitions( "-D${GRIDTYPE}" )
 add_definitions( "-DGRIDDIM=${GRIDDIM}" )

dune/fem-dg/test/advdiff/parameter.in

+# DATA WRITER
+#------------
+
+fem.prefix: ${CMAKE_CURRENT_SOURCE_DIR}/data # specify directory for data output (is created if not exists)
+fem.io.datafileprefix: heat # prefix data data files 
+fem.io.savestep: 0.1 # save data every time interval 
+fem.io.savecount: -1 # save every i-th step
+
+
+# GRID SOLUTION
+#--------------
+
+gridsol.savestep: 0.01
+gridsol.firstwrite: 0.1
+gridsol.filename: heat-checkpoint
+
+
+# GENERAL
+#--------
+
+paramfile: ${CMAKE_CURRENT_SOURCE_DIR}/../parameter/paramBase
+
+
+# PROBLEM SETUP
+#--------------
+
+# problem: heat, quasi, plaplace
+#advdiff.problem: deformational
+advdiff.problem: pulse
+
+femhowto.endTime: 1.0
+femhowto.diffusionTimeStep: 1
+femhowto.epsilon: 0.0
+femhowto.plaplace: 3.0 
+femhowto.xvelocity: 1.    # the only advection part for the linear heat eqn
+femhowto.yvelocity: 3.    # the only advection part for the linear heat eqn
+femhowto.zvelocity: 0.    # the only advection part for the linear heat eqn
+
+
+# DOMAIN
+#-------
+
+fem.io.macroGridFile_1d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/unitcube1.dgf
+fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/unitcube2.dgf
+fem.io.macroGridFile_3d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/unitcube3.dgf
+
+
+# SOLVER
+#-------
+dgdiffusionflux.upwind: -1 -0.001
+paramfile: ${CMAKE_CURRENT_SOURCE_DIR}/../parameter/paramSolver
+femhowto.maxTimeStep: 0.5

dune/fem-dg/test/dataio/CMakeLists.txt

@@ -10,7 +10,7 @@ set(POLORDER  2)
 set(DIMRANGE 5)
 set(USE_SIONLIB 0)
 
-configure_file(parameter ${CMAKE_CURRENT_BINARY_DIR}/parameter COPYONLY)
+configure_file(parameter.in ${CMAKE_CURRENT_BINARY_DIR}/parameter)
 
 add_definitions( "-D${GRIDTYPE}" )
 add_definitions( "-DGRIDDIM=${GRIDDIM}" )

dune/fem-dg/test/dataio/parameter.in

+femhowto.verboserank: 0
+femhowto.verbose: 1
+
+# macro grid file
+fem.io.macroGridFile: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/unitcube2.dgf
+
+# macro grid file
+fem.io.macroGridFile_3d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/unitcube3.dgf
+
+# if false no discrete function data is written (for debugging)
+fem.io.writedata: true
+
+#fem.io.checkpointrestartfile: ${CMAKE_CURRENT_SOURCE_DIR}/checkpoint
+
+# number of EOC steps (only 1 for checkpointing)
+femhowto.eocSteps: 1
+
+femhowto.endTime: 1.0
+femhowto.odesolver: explicit
+femhowto.diffusionTimeStep: 1
+femhowto.epsilon: 2.
+femhowto.penalty: 1.
+fem.timeprovider.factor: 1.
+fem.io.savestep: 0.1
+
+fem.io.sionlib.numfiles: 1
+fem.io.sionlib.blocksize: 128
+
+#number of global refinements before start of simulation 
+femhowto.startLevel: 2
+
+# parameters from time dependent problems 
+femhowto.startTime: 0
+femhowto.endTime: 0.4
+femhowto.maxTimeStep: 0.1
+femhowto.printCount: 1
+
+# SaveStep (write data every `saveStep' time period, <=0 deactivates) 
+fem.io.savestep: 0.1
+# SaveCount (write daa every saveCount time steps, <=0 deactivates)
+fem.io.savecount: 0
+
+# toggle verbosity of on process (-1: off, p: process p is verbose, in general 0 is a good choice)
+fem.verboserank: 0
+
+#number of global refinements before start of simulation 
+fem.adaptation.coarsestLevel: 2
+fem.adaptation.finestLevel: 2
+
+# number of EOC steps 
+femhowto.eocSteps: 4
+
+# specify directory for data output (is created if not exists)
+fem.prefix:  ${CMAKE_CURRENT_SOURCE_DIR}/data
+# prefix data data files 
+fem.io.datafileprefix: solution
+# save data every time interval 
+fem.io.savestep: 0.1
+# save every i-th step
+fem.io.savecount: 1
+
+# output format: binary | vtk-cell | vtk-vertex (projected in DG case) | none 
+fem.io.outputformat: binary
+# toggle grape display (0 = off | 1 = on)
+fem.io.grapedisplay: 0
+
+# write checkpoint every 'checkpointstep' timestep 
+fem.io.checkpointstep: 7
+# write 'checkpointmax' number of different check points 
+fem.io.checkpointmax: 8 
+

dune/fem-dg/test/euler/CMakeLists.txt

@@ -11,7 +11,7 @@ set(POLORDER 2)
 set(FLUX 1)
 set(DIFFFLUXTYPE PRIMALDG)
 
-configure_file(parameter ${CMAKE_CURRENT_BINARY_DIR}/parameter COPYONLY)
+configure_file(parameter.in ${CMAKE_CURRENT_BINARY_DIR}/parameter)
 
 add_definitions( "-D${GRIDTYPE}" )
 add_definitions( "-DGRIDDIM=${GRIDDIM}" )

dune/fem-dg/test/euler/parameter.in

+# PROBLEM SELECTION 
+#------------------
+# possible: "sod" , "withman", "withmansmooth", "smooth1d" , "ffs" , "diffraction" , "shockbubble"
+euler.problem: sod 
+
+# euler.problemflag: 0
+# euler.riemanndata: [1., -1., 1.,    1., 1., 1.]
+
+# LIMITER SETTINGS
+#-----------------
+
+# 0 = only dg solution | 1 = only reconstruction | 2 = both 
+femdg.limiter.admissiblefunctions: 1 
+# tolerance for shock indicator 
+femdg.limiter.tolerance: 1
+# threshold for avoiding over-excessive limitation 
+femdg.limiter.limiteps: 1e-8
+# add indicator to outputvariables 
+femdg.limiter.indicatoroutput: true
+
+# DATA WRITER
+#------------
+
+fem.io.path: ${CMAKE_CURRENT_SOURCE_DIR}/data/euler
+fem.io.datafileprefix: RC
+fem.io.savestep: 0.01 # SaveStep (write data every `saveStep' time period, <=0 deactivates)
+fem.io.savecount: -1 # SaveCount (write data every saveCount time steps, <=0 deactivates)
+
+
+# GRID SOLUTION 
+#--------------
+
+gridsol.savestep: 0.5
+gridsol.firstwrite: 0.5
+gridsol.filename: straka-checkpoint
+
+
+# GENERAL
+#--------
+
+paramfile: ${CMAKE_CURRENT_SOURCE_DIR}/../parameter/paramBase
+
+femhowto.eocSteps: 3
+problem.verboserank: 0
+
+
+# PROBLEM SETUP
+#--------------
+
+paramfile: ${CMAKE_CURRENT_SOURCE_DIR}/../parameter/paramPhysicalConstants
+
+g: 1. # gravity force [m/ss]
+femhowto.startTime: 0.
+femhowto.endTime: 0.15
+hSpeed0: 1. # x-axis speed [m/s]
+vSpeed0: 1.25 # z-axis speed [m/s]
+p0: 1. # surface pressure [Pa]
+N: 0.01 # Brunt-Vaisala frequency
+Re: 1. # Reynold's number
+Pr: 1. # Prandtl's number
+rho_a: 1.
+rho_b: 0.05
+
+delta_T: -15 # temperature perturbation peak [K]
+x_c: 0.25 # x-center of perturbation ball
+y_c: 0.25 # y-center of perturbation ball
+z_c: 0.25 # z-center of perturbation ball
+r: 0.25 # radius of perturbation ball
+
+
+# DOMAIN SETUP
+#-------------
+
+fem.io.macroGridFile_1d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/unitcube1.dgf
+#fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/unitcube2.dgf
+fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/grid2d_str1d.dgf
+fem.io.macroGridFile_3d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/unitcube3.dgf
+
+
+# SOLVER CONFIGURATION
+#---------------------
+
+paramfile: ${CMAKE_CURRENT_SOURCE_DIR}/../parameter/paramSolver

dune/fem-dg/test/navierstokes/CMakeLists.txt

@@ -13,7 +13,7 @@ set(PROBLEM 2)
 set(FLUX 1)
 set(DIFFFLUX PRIMALDG)
 
-configure_file(parameter ${CMAKE_CURRENT_BINARY_DIR}/parameter COPYONLY)
+configure_file(parameter.in ${CMAKE_CURRENT_BINARY_DIR}/parameter )
 
 add_definitions( "-D${GRIDTYPE}" )
 add_definitions( "-DGRIDDIM=${GRIDDIM}" )

dune/fem-dg/test/navierstokes/parameter.in

+# ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 
+# This file precribes parameters for the testcase found in   
+#
+# Gregor Gassner,
+# PhD thesis
+#
+# ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ 
+
+# DATA WRITER
+#------------
+
+fem.prefix: ${CMAKE_CURRENT_SOURCE_DIR}/data
+fem.io.datafileprefix: NS
+fem.io.savestep: 0.01 # SaveStep (write data every `saveStep' time period, <=0 deactivates)
+fem.io.savecount: -1 # SaveCount (write data every saveCount time steps, <=0 deactivates)
+
+femhowto.printCount: 1
+
+femhowto.additionalvariables: false
+
+
+# GENERAL
+#--------
+
+paramfile: ${CMAKE_CURRENT_SOURCE_DIR}/../parameter/paramBase
+
+
+# GRID SOLUTION 
+#--------------
+
+gridsol.savestep: 0.5
+gridsol.firstwrite: 0.5
+gridsol.filename: nseq-checkpoint
+
+
+# PROBLEM SETUP
+#--------------
+
+paramfile: ${CMAKE_CURRENT_SOURCE_DIR}/../parameter/paramPhysicalConstants
+
+# WBPROBLEM
+# g: 0.7 # m/(ss)
+# p0: 10. # surface pressure Pa=kg/(mss)
+# diffusion coefficients
+mu: 0.0001 #00001 #  kg/(ms)
+g: 9.81 # m/ss
+Re: 1. #(Reynold's number)
+Pr: 0.72 # 0.72 #(Prandtl's number)
+femhowto.startTime: 0. # s
+femhowto.endTime: 0.1
+femhowto.eocSteps: 5
+
+gammaGNS: 0.5
+omegaGNS: 1.
+kGNS: 3.1415926535897932385
+
+
+# DOMAIN CONFIGURATION
+#---------------------
+
+fem.io.macroGridFile_1d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/nswaves_1d.dgf
+fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/nswaves_2d.dgf
+#fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/mesh4_1_2.typ1.dgf
+#fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/mesh4_1_1.typ1.dgf
+#fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/nswaves_2d_unstr.dgf
+fem.io.macroGridFile_3d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/nswaves_3d.dgf
+#fem.io.macroGridFile_3d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/dkershaw08.msh.dgf
+#fem.io.macroGridFile_3d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/RandMesh4.msh.dgf
+
+
+# SOLVER CONFIGURATION
+#---------------------
+
+paramfile: ${CMAKE_CURRENT_SOURCE_DIR}/../parameter/paramSolver
+

dune/fem-dg/test/poisson/CMakeLists.txt

@@ -12,7 +12,7 @@ set(GRIDDIM  2)
 set(DIMRANGE  1)
 set(FLUX 1) #2
 
-configure_file(parameter ${CMAKE_CURRENT_BINARY_DIR}/parameter COPYONLY)
+configure_file(parameter.in ${CMAKE_CURRENT_BINARY_DIR}/parameter)
 
 add_definitions( "-D${GRIDTYPE}" )
 add_definitions( "-DGRIDDIM=${GRIDDIM}" )

dune/fem-dg/test/poisson/parameter.in

+femhowto.eocSteps: 30
+UseBlocking: 0
+
+# enable or disable DG stabilization 
+use_dgstabilization: true
+use_oldassemble: false
+
+# enable or disable strong boundary conditions 
+use_strongbnd: false
+
+# polynomial order = 0,1,2,3,4
+femhowto.polynomialOrder: 2
+
+# problem number 
+femhowto.problem: 8 # 5 6 13 16
+
+femhowto.globalshift: 0
+femhowto.factor: 1
+femhowto.tolerance: 1e-4     # global adapt with tolerance=0 
+femhowto.adaptive.theta: 0.05 # equal distribution with theta=0, tolerance>0
+# true = maximum (theta defines the percentage) | false = Doerfler 
+femhowto.adaptive.maximumstrategy: false
+
+# none = disabled | coeffroot | prior2p 
+padaptive.method: none
+
+femhowto.verbose: 1
+fem.solver.verbose: 1
+
+fem.solver.matrixfilename: matrixfile
+
+# macro grid file
+
+fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/unitcube2.dgf
+#fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/nonaffine.dgf
+#fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/corner_cube.dgf
+#fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/corner.dgf
+#fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/corner_green.dgf
+#fem.io.macroGridFile_2d: ${CMAKE_CURRENT_SOURCE_DIR}/../grids/corner_red.dgf
+
+
+femhowto.epsilon: 0.1
+#femhowto.xvelocity: 1.    # the only advection part for the linear heat eqn
+#femhowto.yvelocity: 3.    # the only advection part for the linear heat eqn
+#femhowto.zvelocity: 0.    # the only advection part for the linear heat eqn
+femhowto.xvelocity: 0.    # the only advection part for the linear heat eqn
+femhowto.yvelocity: 0.    # the only advection part for the linear heat eqn
+femhowto.zvelocity: 0.    # the only advection part for the linear heat eqn
+
+# choises are: CDG2, CDG, IP, NIPG, BO, BR2
+dgdiffusionflux.method: CDG2 
+dgdiffusionflux.theoryparameters: 1
+dgdiffusionflux.lifting: id_id
+#dgdiffusionflux.upwind: -1 -0.001
+#dgdiffusionflux.upwind: 0 0 
+dgdiffusionflux.penalty: 0    # for CDG, CDG2, LDG
+dgdiffusionflux.liftfactor: 0
+
+# toggle verbosity of on process 
+# (-1: off, p: process p is verbose, in general 0 is a good choice)
+fem.verboserank: 0
+fem.adaptation.method: generic 
+
+#number of global refinements before start of simulation 
+femhowto.startLevel: 0
+
+# number of EOC steps 
+
+# specify directory for data output (is created if not exists)
+fem.prefix: ${CMAKE_CURRENT_SOURCE_DIR}/data
+# prefix data data files 
+fem.io.datafileprefix: solution
+# if you want to add time stemp to eoc file name
+# # to avoid overwriting the eoc files
+fem.io.eocFileTimeStamp: 0
+
+# output format: grape | vtk-cell | vtk-vertex (projected in DG case),  sub-vtk-cell
+fem.io.outputformat: vtk-cell
+fem.io.subsamplinglevel: 0
+# toggle grape display (0 = off | 1 = on)
+fem.io.grapedisplay: 0
+
+# write file with values of numerical solution at
+# the end time along given line
+femhowto.sampleAlongLine: 0
+
+paramfile: solverparameter
+
+poisson.nonConformOrigin: false
+
+istl.preconditioning.method: ilu-0
+istl.preconditioning.iterations: 1
+istl.preconditioning.relaxation: 1
+
+nonconformitydifference: -1