Improve log: timestamp on multidomain simulation

- Full verbosity of one step method
- Fix code format on executables

dune/copasi/common/stepper.hh

@@ -333,7 +333,7 @@ private:
     _logger.trace("Get one step operator"_fmt);
     auto one_step_operator = std::make_shared<OneStepOperator>(
       *_rk_method, grid_operator, *non_linear_operator);
-    one_step_operator->setVerbosityLevel(2);
+    one_step_operator->setVerbosityLevel(5);
 
     _internal_state =
       std::make_any<InternalState>(&system,

dune/copasi/model/multidomain_diffusion_reaction.cc

@@ -316,6 +316,13 @@ ModelMultiDomainDiffusionReaction<Traits>::setup_vtk_writer()
         collector.addSolution(data[i]->_lfs.child(i).child(k),
                               PDELab::vtk::defaultNameScheme());
       }
+
+      if (i == 0)
+        log_writer.detail("Writing solution for {:.2f}s time stamp"_fmt, state.time);
+      log_writer.trace("Writing vtu file: '{0}/{0}-{1:0>5}.vtu'"_fmt,
+                      name,
+                      timesteps.size());
+
       sequential_writer.write(state.time, Dune::VTK::base64);
       sequential_writer.vtkWriter()->clear();
     }

src/dune_copasi_md.cc

@@ -46,7 +46,7 @@ main(int argc, char** argv)
   using namespace Dune::Literals;
 
   try {
-        std::time_t stime_t = std::chrono::system_clock::to_time_t(stime_c);
+    std::time_t stime_t = std::chrono::system_clock::to_time_t(stime_c);
     std::tm stime_tm;
     std::memcpy(&stime_tm, std::localtime(&stime_t), sizeof(std::tm));
     auto stime_s = fmt::format("{:%a %F %T %Z}", stime_tm);
@@ -67,7 +67,7 @@ main(int argc, char** argv)
     using MDGTraits = Dune::mdgrid::DynamicSubDomainCountTraits<dim, 1>;
     using Grid = Dune::mdgrid::MultiDomainGrid<HostGrid, MDGTraits>;
 
-    auto& grid_config = config.sub("grid",true);
+    auto& grid_config = config.sub("grid", true);
     auto level = grid_config.get<int>("initial_level", 0);
 
     auto grid_file = grid_config.get<std::string>("file");
@@ -85,11 +85,11 @@ main(int argc, char** argv)
       md_grid_ptr->postAdapt();
     }
 
-    auto& model_config = config.sub("model",true);
+    auto& model_config = config.sub("model", true);
     int order = model_config.get<int>("order");
 
     // create time stepper
-    auto timestep_config = model_config.sub("time_stepping",true);
+    auto timestep_config = model_config.sub("time_stepping", true);
     auto end_time = timestep_config.template get<double>("end");
     auto initial_step = timestep_config.template get<double>("initial_step");
     auto stepper = Dune::Copasi::make_default_stepper(timestep_config);
@@ -97,7 +97,7 @@ main(int argc, char** argv)
     auto file = model_config.get("writer.file_path", "");
     auto write_output = [=](const auto& state) {
       if (not file.empty())
-        state.write(file,true);
+        state.write(file, true);
     };
 
     if (order == 0) {
@@ -131,11 +131,11 @@ main(int argc, char** argv)
     }
   } catch (Dune::Exception& e) {
     log.error("Dune reported error:"_fmt);
-    log.error(2,"{}"_fmt, e.what());
+    log.error(2, "{}"_fmt, e.what());
     end_code = 1;
   } catch (std::exception& e) {
     log.error("C++ reported error:"_fmt);
-    log.error(2,"{}"_fmt, e.what());
+    log.error(2, "{}"_fmt, e.what());
     end_code = 1;
   } catch (...) {
     log.error("Unknown exception thrown!"_fmt);

src/dune_copasi_sd.cc

@@ -67,7 +67,7 @@ main(int argc, char** argv)
     using MDGTraits = Dune::mdgrid::DynamicSubDomainCountTraits<dim, 1>;
     using MDGrid = Dune::mdgrid::MultiDomainGrid<HostGrid, MDGTraits>;
 
-    auto& grid_config = config.sub("grid",true);
+    auto& grid_config = config.sub("grid", true);
     auto level = grid_config.get<int>("initial_level", 0);
 
     auto grid_file = grid_config.get<std::string>("file");
@@ -88,8 +88,8 @@ main(int argc, char** argv)
       md_grid_ptr->postAdapt();
     }
 
-    auto& model_config = config.sub("model",true);
-    auto& compartments_map = model_config.sub("compartments",true);
+    auto& model_config = config.sub("model", true);
+    auto& compartments_map = model_config.sub("compartments", true);
     int order = model_config.get<int>("order");
 
     // TODO: Use OS for different domains when is ready
@@ -105,7 +105,7 @@ main(int argc, char** argv)
       Dune::stackobject_to_shared_ptr(md_grid_ptr->subDomain(domain));
 
     // create time stepper
-    auto timestep_config = model_config.sub("time_stepping",true);
+    auto timestep_config = model_config.sub("time_stepping", true);
     auto end_time = timestep_config.template get<double>("end");
     auto initial_step = timestep_config.template get<double>("initial_step");
     auto stepper = Dune::Copasi::make_default_stepper(timestep_config);
@@ -113,7 +113,7 @@ main(int argc, char** argv)
     auto file = model_config.get("writer.file_path", "");
     auto write_output = [=](const auto& state) {
       if (not file.empty())
-        state.write(file,true);
+        state.write(file, true);
     };
 
     if (order == 0) {
@@ -147,11 +147,11 @@ main(int argc, char** argv)
     }
   } catch (Dune::Exception& e) {
     log.error("Dune reported error:"_fmt);
-    log.error(2,"{}"_fmt, e.what());
+    log.error(2, "{}"_fmt, e.what());
     end_code = 1;
   } catch (std::exception& e) {
     log.error("C++ reported error:"_fmt);
-    log.error(2,"{}"_fmt, e.what());
+    log.error(2, "{}"_fmt, e.what());
     end_code = 1;
   } catch (...) {
     log.error("Unknown exception thrown!"_fmt);