- Jan 20, 2021
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When the Dune::Copasi::Impl namespace was introduced, the compiler complains that this line has not a clear namespace reference
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If the compartment names happen to not be ordered in the same way as their indices, this could introduce a parsing error.
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* Some typos are fixed * The boundary subsection of the new membranes is fixed
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This was introduced by mistake some time ago. It was not ready, and never evolved to anything concrete.
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* This naming convention would be compatible with other coming features like boundary conditions on the exterior and extra interface species
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* This is the whole purpose of the custom outflow keyword. However, the finite volume gradient is not that easy to calculate anymore because it relies on the outside component. Therefore, we only allow gradients for same-named variables for FV cases.
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This was definitely a typo
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Hopefully this time it will be right
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* I am still unsure about the sign of the derivative with respect to a normal flux. This also showed that the numerical jacobian is not sensitive enough to capture these types of errors.
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This new outflux parameters are equivalent to the previous ones
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This test is already covered by the liver test
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* The variables removed are redundant and are not needed to do any computations on the integral. Thus they are removed and only used during construction
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- In the implemented fluxes, the normal direction is fixed for every intersection (i.e. it does not matter from where you look at it, is always points the same direction). Thus, signs must change.
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- Nov 17, 2020
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Santiago Ospina De Los Ríos authored
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- Nov 16, 2020
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Santiago Ospina De Los Ríos authored
This allows the evolve method
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Santiago Ospina De Los Ríos authored
* Also added compatibility for the variadic one. It now inherits from the default flags so new flags (e.g. selective flags) do not break the operator.
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- Nov 12, 2020
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Santiago Ospina De Los Ríos authored
This is done to allow custom application of the last time step from the caller (e.g. adaptive timestep)
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- Nov 11, 2020
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Santiago Ospina De Los Ríos authored
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Santiago Ospina De Los Ríos authored
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Santiago Ospina De Los Ríos authored
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Santiago Ospina De Los Ríos authored
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Santiago Ospina De Los Ríos authored
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- Oct 23, 2020
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Santiago Ospina De Los Ríos authored
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Santiago Ospina De Los Ríos authored
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Santiago Ospina De Los Ríos authored
* Since damping factor and iterations is nothing that can be affected by the no linear search option, the they are unofficially not required.
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