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Feature/add python bindings

Merged Feature/add python bindings
feature/addPythonBindings into master
Merged Andreas Dedner requested to merge feature/addPythonBindings into master
  1. Apr 04, 2020
  3. Apr 03, 2020
  5. Apr 02, 2020
  7. Mar 27, 2020
  9. Mar 24, 2020
  11. Mar 23, 2020
  13. Mar 22, 2020
  15. Mar 20, 2020
  17. Mar 19, 2020
  19. Mar 18, 2020
  21. Mar 17, 2020
  23. Mar 13, 2020
  25. Mar 12, 2020
  27. Mar 09, 2020
    • Andreas Dedner's avatar
      added keep_alive to exported class · 709bf727
      Andreas Dedner authored
      709bf727
    • Andreas Dedner's avatar
      adapt to some changes to the core and also improve register FMatrix function · 063c6116
      Andreas Dedner authored 
      change dune.module to 2.8-git

bug fix
      063c6116
    • Andreas Dedner's avatar
      added a constructor to the SimpleGF that takes a GF · 797d4edc
      Andreas Dedner authored 
       (up until now the evaluator was passed in)

improve test a bit - also see if a reference to a FV and an existing
GF can be used

improve the implementation of the gridFunction
Also remove some deprecated functionality

remove some codes that not needed anymore

dune-function.py -> dune-function.notworking (needs to be adapted to new dune-functions interface)
also made some tests work with newer API

some bug fixes with correct C++ type export for grid functions from C++ lambda

improve handling of grid functions

minor fixes

some more minor improvements (make it easy to use io.StringIO also with algorithm)

export a template argument

[bugfix][numydatahandle] fix forward declaration of MCMGMapper.

improve usage of grid function where user can provide a lambda of the form
[x=arg0,y=arg1](e,x) {...};
instead of
auto f(x,y) { return [x,y](e,x) {...}; }

improve determining the dimension of the return value of grid functions
and make sure that fieldvectors of the right side are registered
      797d4edc
    • Andreas Dedner's avatar
      added a constructor to the SimpleGF that takes a GF · 44b1f0c4
      Andreas Dedner authored 
       (up until now the evaluator was passed in)

improve test a bit - also see if a reference to a FV and an existing
GF can be used

improve the implementation of the gridFunction
Also remove some deprecated functionality

remove some codes that not needed anymore

dune-function.py -> dune-function.notworking (needs to be adapted to new dune-functions interface)
also made some tests work with newer API

some bug fixes with correct C++ type export for grid functions from C++ lambda

improve handling of grid functions

minor fixes

some more minor improvements (make it easy to use io.StringIO also with algorithm)

export a template argument

[bugfix][numydatahandle] fix forward declaration of MCMGMapper.

improve usage of grid function where user can provide a lambda of the form
[x=arg0,y=arg1](e,x) {...};
instead of
auto f(x,y) { return [x,y](e,x) {...}; }

improve determining the dimension of the return value of grid functions
and make sure that fieldvectors of the right side are registered
      44b1f0c4
    • Andreas Dedner's avatar
      added a constructor to the SimpleGF that takes a GF · 99d37fc4
      Andreas Dedner authored 
       (up until now the evaluator was passed in)

improve test a bit - also see if a reference to a FV and an existing
GF can be used

improve the implementation of the gridFunction
Also remove some deprecated functionality

remove some codes that not needed anymore

dune-function.py -> dune-function.notworking (needs to be adapted to new dune-functions interface)
also made some tests work with newer API

some bug fixes with correct C++ type export for grid functions from C++ lambda

improve handling of grid functions

minor fixes

some more minor improvements (make it easy to use io.StringIO also with algorithm)

export a template argument

[bugfix][numydatahandle] fix forward declaration of MCMGMapper.

improve usage of grid function where user can provide a lambda of the form
[x=arg0,y=arg1](e,x) {...};
instead of
auto f(x,y) { return [x,y](e,x) {...}; }

improve determining the dimension of the return value of grid functions
and make sure that fieldvectors of the right side are registered
      99d37fc4
    • Andreas Dedner's avatar
      added a constructor to the SimpleGF that takes a GF · c069aeeb
      Andreas Dedner authored 
       (up until now the evaluator was passed in)

improve test a bit - also see if a reference to a FV and an existing
GF can be used

improve the implementation of the gridFunction
Also remove some deprecated functionality

remove some codes that not needed anymore

dune-function.py -> dune-function.notworking (needs to be adapted to new dune-functions interface)
also made some tests work with newer API

some bug fixes with correct C++ type export for grid functions from C++ lambda

improve handling of grid functions

minor fixes

some more minor improvements (make it easy to use io.StringIO also with algorithm)

export a template argument

[bugfix][numydatahandle] fix forward declaration of MCMGMapper.

improve usage of grid function where user can provide a lambda of the form
[x=arg0,y=arg1](e,x) {...};
instead of
auto f(x,y) { return [x,y](e,x) {...}; }

improve determining the dimension of the return value of grid functions
and make sure that fieldvectors of the right side are registered
      c069aeeb
    • Andreas Dedner's avatar
      use common/parallel/communication.hh instead of the deprecated collectivecommunication.hh · 03712c1d
      Andreas Dedner authored
      03712c1d
  29. Feb 16, 2020
    • Andreas Dedner's avatar
      added a function to import a c++ class similar to the 'algorithm'. · 394cc15a
      Andreas Dedner authored 
      This makes it possible to import "statefull" C++ objects to Python.
At the moment only the constructor is available on the Python side
so the object can only be used as argument for another C++ function/method.
Exporting methods will be made available as well in a future version.
      394cc15a
  31. Dec 16, 2019
  33. Dec 15, 2019
  35. Nov 23, 2019
  37. Oct 01, 2019
  39. Sep 24, 2019
  41. Sep 20, 2019
  43. Sep 15, 2019
    • Andreas Dedner's avatar
      added functions to generator for setting compile flags and for unconditionally making targets · 70f168b0
      Andreas Dedner authored 
      Can be used directly in a scipt by calling for example
  dune.generator.setFlags("-g") or dune.generator.unsetFlags() to get the flag used during configure
and
  dune.generator.setNoDependencyCheck() and dune.generator.setDependencyCheck()
before/after a module is compile, e.g., calling dune.grid.yaspGrid(...)

added some simpler methods to use for recompilation/setting CXXFlags and add some logger output

added an option to add additional flags to the default cxxflags
(function dune.generator.addToFlags)

remoove trailing whitespaces from CXXFlags

minor fix
      70f168b0
    • Andreas Dedner's avatar
      added functions to generator for setting compile flags and for unconditionally making targets · 45f83576
      Andreas Dedner authored 
      Can be used directly in a scipt by calling for example
  dune.generator.setFlags("-g") or dune.generator.unsetFlags() to get the flag used during configure
and
  dune.generator.setNoDependencyCheck() and dune.generator.setDependencyCheck()
before/after a module is compile, e.g., calling dune.grid.yaspGrid(...)

added some simpler methods to use for recompilation/setting CXXFlags and add some logger output

added an option to add additional flags to the default cxxflags
(function dune.generator.addToFlags)

remoove trailing whitespaces from CXXFlags

minor fix
      45f83576
  45. May 14, 2019
  47. Mar 11, 2019
    • Andreas Dedner's avatar
      make it possible to split the includes provided to the generator into two · abaabffc
      Andreas Dedner authored 
      parts [mainIncludeList, additionalIncludeList]
both are added to the generated code but only the first is added to the
_include property of the generated python class.
Usage: one can put the code for exporting the python class into the second
list so that other objects don't pick those up in their dependency list
      abaabffc
  49. Feb 26, 2019
  51. Feb 25, 2019
  53. Oct 02, 2018
  55. Oct 01, 2018
  57. Sep 14, 2018
  59. Sep 09, 2018
  61. Jul 27, 2018
  63. Jul 16, 2018
  65. Jul 08, 2018
  67. Jul 05, 2018
    • Martin Nolte's avatar
      [bugfix] fix memory fault upon module unloading in Python 3.6 · a4a3b4b1
      Martin Nolte authored 
      In Python 3.6 we observe memory faults at program termination. These
result from the static variables caching the Python object wrapping the
type registry: Upon termination, the type registry seems to be destroyed
even if references to it remain.

Unfortunately, it is not clear whether this is a problem within
Pybind11. Patching to the latest bugfix release did not help. For now,
we implement the simplest way around the problem: Do not cache the type
registry, but refetch the pointer each time the type registry is used.
While this has a negative impact on performance, it should be negligible
to subsequent CMake calls.
      a4a3b4b1
  69. Jul 03, 2018
  71. Jun 29, 2018
  73. Jun 09, 2018
  75. Jun 07, 2018