Samuel Burbulla authored 4 years ago and Andreas Dedner committed 4 years ago

don't need shared libs to install dune modules so adapted packagedata
accordingly - this solves the issue of having to prescibe some relative rpath

Also do not require setup.py/pyproject.toml to be added to git

Samuel Burbulla authored 4 years ago and Andreas Dedner committed 4 years ago

Add relative CMAKE_INSTALL_RPATH.

added CMAKE_BUILD_PATH to the rpath of python modules as well

added missing package include

add CMAKE_INSTALL_RPATH_USE_LINK_PATH to setup.py cmake flags to avoid
issue with missing rpath entries for CMAKE_PREFIX_PATH

Do not add suggestions any more.

Samuel Burbulla authored 4 years ago and Andreas Dedner committed 4 years ago

Reset LD_LIBARY_PATH when call deactivate.

Fix dynamic_lookup.

add option to `dunepackaging` script to only build sdist but not upload

exti with code 0 in dunepackaging.py -c so it can be used with dunecontrol

also set the `LD_LIBRARY_PATH`

[bugfix] used the wrong way to access the path to a sourced script - was working by chance

Samuel Burbulla authored 4 years ago and Andreas Dedner committed 4 years ago

make setup-dunepy.py work again without an installed dune-common

remove unused default cmake options for building dune-py

Add git checkout setup.py pyproject.toml to dunepackaging -c.

Samuel Burbulla authored 4 years ago and Andreas Dedner committed 4 years ago

Remove dynamic lookup stuff for macos.

Replace ProjectAuthorEmail by ProjectMaintainerEmail.

make it possible to use setup.py without having an installed dune-common python package. This requires having the PYTHONPATH set as it is now done in dune-common/bin/dunepackaging.py

[bugfix] previous commit

[bugfix] previous commit

set the correct 'prefix' in the pc files if SKBUILD is set, i.e.,
a wheel is being build using scikit-build

to automate generation of metadata for setup.py for other modules

[bug fix] previous commit

move files around a bit to be able to use the metaData extraction
from dunepackaging.py

use more of the cmake variables in python/setup.py.in

fix an issue in dunepackaging.py for modules without a python package

- remove CMakeCache.txt file in dune-py
- check that pyproject.toml file contains all dune module dependencies
  mentioned in dune.module to check consistency

[bug fix] previous commit

add dune modules from pyproject.toml to install_requires in setup.py

[bug fix] previous commit

added files generated when calling python setup.py sdist to git ignore list

Update bin/dunepackaging.py.

Add path to dunepackaging if dune-common.

Append version number devDATE to -git versions and add suggestions if they have a pypi package.

Samuel Burbulla authored 4 years ago and Andreas Dedner committed 4 years ago

Remove __pycache__.

Add CMAKE_MACOSX_RPATH=TRUE.

experiment with extracting required meta data for generating setup.py from
- dune.module file
- pkg_resource
This version does not require an extra project.py file but does assume that
the python module for which setup.py is to be generated is installed. Also dune.common
must be available:
- dune.common.module.Description class is used to parse dune.module file
- pkg_resource is used to extract additional metadata information (as provided by
  python/setup.py.in) requiring the module to be installed. This data is
  'description' ('Summary'), 'url' ('home-page'), 'author', and the install_requires.
  At the moment this will fail e.g. for dune-localfunctions which has no python
  package. We could decide to add the required information to dune.module and use
  replacements in python/setup.py.in instead.

Parse meta data from dune.module and setup.py.in.

add a try except around trying to open python/setup.py.in

Samuel Burbulla authored 4 years ago and Andreas Dedner committed 4 years ago

Build shared libraries with .so suffix on Mac.

Install pybind11 modules.

Generate dependencies of dune-py on-demand.

fixed a few issues with generating dune-py on a linux machine

Add support for --module=mod to bin/setup-dunepy.py

See merge request core/dune-common!902

Carsten Gräser authored 4 years ago and Andreas Dedner committed 4 years ago

This adds an optional parameter `--module=mod` to `setup-dunepy.py`.
If this parameter is passed, only `mod` and its dependencies are
used as dependencies of the newly created dune-py module. This allows
to do
```
dunecontrol --opts=my.opts --module=foo all
setup-dunepy.py --opts=my.opts --module=foo install
```
which would otherwise fail if `setup-dunepy.py` tries to process
found modules that have not been build by `dunecontrol`. If the
option is not passed all found modules are used as dependencies
as before.

[bugfix][Python] indentation of compilation call.

See merge request core/dune-common!899

use a unique_ptr to avoid memory leak

See merge request core/dune-common!898

switch to newer pybind11 version (2.6.1 from Nov 2020)

See merge request core/dune-common!895

use relative path for add_subdirectory in python generator

See merge request core/dune-common!896

require at least MPI >= 3.0

See merge request core/dune-common!891

remove ambiguity when multiplying Float128 with __float128

See merge request core/dune-common!846

Remove the ENABLE_SCOTCH_METIS and ENABLE_SCOTCH_PRMETIS flags from the cmake find modules

See merge request core/dune-common!887

Add wrapper representing the transposed of a matrix

See merge request core/dune-common!889

Currently the wrapper only implements
```cpp
auto c = a*transpose(b);
```
if `a` is a `FieldMatrix* of appropriate size. This is
optimal even for sparse `b` because it only relies on
calling `b.mv(a[i], c[i])` for the rows of `a`. More
functionality may be added later on.

Since the created object only stores a reference
to the wrapped matrix, it cannot be modified and
should not be stored but used directly.

The classical application is doing a local-to-global
transformation of the Jacobians of a local finite element.
```cpp
auto jacobian = referenceJacobian * transpose(geometry.inverseJacobianTransposed(xLocal));
```

Feature/cmake with link interface

See merge request core/dune-common!875